I found one book that deals rather well with the perceived struggle between Christian fundamentalist religion and the science of Evolution. The book is Why Darwin Matters by Michael Shermer. Shermer started as a creationist, was educated in the sciences, and is a strong advocate of not only the undeniability of the theory of Evolution but also for the way natural selection is perhaps a better supporter for religious or spiritual interpretations of life on this planet than revelation and faith.
As Shermer writes: Evolution Makes For Good Theology. His discussion of the evolution of morality is especially convincing and in no way negates religion but rather shows that religion has a firm purpose in our lives .. a purpose that developed naturally along with the other cultural developments that defined the early humans. And Shermer makes his case convincingly using logic, reason and clear evidence, never requiring magic or miracles.
As a corollary to this, Shermer also shows how elements in the history of the evolving species we call man can provide an insight into man’s propensity for violence and brutality, lying and cheating, and still allow for sharing and altruism, loving and nurturing.